CMD Bioscience Publications and Presentations
Computational Prediction and Analysis of the DR6-NAPP interaction, at 22nd American Peptide Symposium in San Diego CA, June 25-30 2011 Poster # xxx.
Using Modeling and de novo Peptide Design to Identify Novel, Optimizable, Broad-Spectrum and Specific Flavivirus Anti-Infectives: From Concept to Success in Eight Weeks, at 22nd American Peptide Symposium in San Diego CA, June 25-30 2011 Poster #xxx
Computational prediction and analysis of the DR6-NAPP interaction. Ponomarev SY, Audie J. Proteins. 2011 May;79(5):1376-95. doi: 10.1002/prot.22962. Epub 2011 Feb 18. PMID: 21337622 [PubMed - indexed for MEDLINE]
The synergistic use of computation, chemistry and biology to discover novel peptide-based drugs: the time is right. Audie J, Boyd C. Curr Pharm Des. 2010;16(5):567-82. Review. PMID: 19929848 [PubMed - indexed for MEDLINE]
Continued development of an empirical function for predicting and rationalizing protein-protein binding affinities. Audie J. Biophys Chem. 2009 Aug;143(3):139-44. Epub 2009 May 14. PMID: 19487068 [PubMed - indexed for MEDLINE]
Development and validation of an empirical free energy function for calculating protein-protein binding free energy surfaces. Audie J. Biophys Chem. 2009 Feb;139(2-3):84-91. Epub 2008 Nov 8. PMID: 19041170 [PubMed - indexed for MEDLINE]
A novel empirical free energy function that explains and predicts protein-protein binding affinities. Audie J, Scarlata S. Biophys Chem. 2007 Sep;129(2-3):198-211. Epub 2007 Jun 7. PMID: 17600612 [PubMed - indexed for MEDLINE]
Accelerating Peptide Discovery
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